Jul 18, 2016
Software
- A new package
ropenaq
(v0.1.1
) is on CRAN.ropenaq
provides access to air quality data from the API of the OpenAQ platform https://docs.openaq.org/, with the different services the API offers (getting measurements for a given query, getting latest measurements, getting lists of available countries/cities/locations). For an introduction to the package see the vignette. Repository on GitHub. - A new package
rgeospatialquality
(v0.3.2
) is on CRAN.rgeospatialquality
provides native wrappers for the functions available via the spatial quality REST API described at http://bit.ly/bioinformatics_btw057. For an introduction to the package see the vignette. Repository on GitHub. - A new version (
0.5.0
) ofritis
is on CRAN. See release notes for more, and see the vignette for an introduction to the package. This is a re-boot ofritis
, overhauled to use the new JSON API, instead of XML, and functions reworked internally, reduced complexity. Repository on GitHub. - A new version (
0.1.2
) ofgutenbergr
is on CRAN.gutenbergr
is an R package to help you download and process public domain works from Project Gutenberg. See the NEWS for changes. For an introduction to the package see the vignette. Repository on GitHub. - A new version (
2.0.7
) ofRNeXML
is on CRAN.RNeXML
is an R package to provide access to phyloinformatic data in ‘NeXML’ format. See the NEWS for changes. For an introduction to the package see the vignettes linked on the CRAN landing page. Repository on GitHub. - A new version (
0.9.4
) ofrgbif
is on CRAN.rgbif
is an R interface to the Global Biodiversity Information Facility API. See release notes for changes. This version adds a new vignette, switches to usingtibble
for data.frame’s, ands includes some minor improvements and bug fixes. For an introduction to the package see the vignette. Repository on GitHub. - A new version (
0.2.3
) ofosmplotr
is on CRAN.osmplotr
provides customisable images of OpenStreetMap (OSM) data and data visualisation using OSM objects. See the NEWS for changes. Repository on GitHub. - A new version (
1.4.2
) ofhunspell
is on CRAN.hunspell
is a spell checker and morphological analyzer library designed for languages with rich morphology and complex word compounding or character encoding. See release notes for changes. Repository on GitHub. - A new version (
0.2.0
) ofgeojsonio
is on CRAN.geojsonio
does I/O for GeoJSON. This version brings a major performance improvement forgeojsonio::geojson_json()
by moving to reading injson
withreadr::read_file()
. See release notes for changes. Repository on GitHub.
Onboarding
We accept community contributed packages via our onboarding system - a software review system, sorta like scholarly paper review, but way better. We’ll highlight new pacakages here that have come through this system. A huge thanks to our reviewers, who do a lot of work reviewing (see the blog post on our review system), and the authors of the packages!
The following package recently made it through our onboarding process:
- europepmc
- Author: Najko Jahn
- Review: ropensci/onboarding#29
- Reviewer: Toph Allen
Use cases
Four recent papers cite and/or use rOpenSci software (or reference rOpenSci):
- Weber et al. cite taxize in their paper Foliar nectar enhances plant–mite mutualisms: the effect of leaf sugar on the control of powdery mildew by domatia-inhabiting mites 1
- Madden et al. cite rAlmteric in their paper Knowledge Dissemination of Intimate Partner Violence Intervention Studies Measured Using Alternative Metrics: Results From a Scoping Review 2
- Michonneau et al. wrote a paper describing rotl, and cite our traits package in their paper rotl: an R package to interact with the Open Tree of Life data 3
- Wagner cited taxize in her paper A review of software tools for spell-checking taxon names in vegetation databases 4
Keep up with rOpenSci news
There are a number of ways to keep up with what rOpenSci is doing:
- Mailing list: Sign up with an email address to get new blog posts sent to your inbox -> ropensci.org/#subscribe
- rOpenSci on Twitter: we’re @ropensci
- The rOpenSci blog at ropensci.org/blog - you can subscribe in any RSS aggregator, or manually via https://ropensci.org/feed.xml. We also announce new blog posts on our Twitter account.
Footnotes
-
Weber, M. G., Porturas, L. D., & Taylor, S. A. (2016). Foliar nectar enhances plant–mite mutualisms: the effect of leaf sugar on the control of powdery mildew by domatia-inhabiting mites. Annals of Botany, mcw118. https://doi.org/10.1093/aob/mcw118 ↩
-
Madden, K., Evaniew, N., Scott, T., Domazetoska, E., Dosanjh, P., Li, C. S., … Sprague, S. (2016). Knowledge Dissemination of Intimate Partner Violence Intervention Studies Measured Using Alternative Metrics: Results From a Scoping Review. Journal of Interpersonal Violence. https://doi.org/10.1177/0886260516657914 ↩
-
Michonneau, F., Brown, J. W., & Winter, D. J. (2016). rotl: an R package to interact with the Open Tree of Life data. Methods in Ecology and Evolution. https://doi.org/10.1111/2041-210x.12593 ↩
-
Wagner, V. (2016). A review of software tools for spell-checking taxon names in vegetation databases. Journal of Vegetation Science. https://doi.org/10.1111/jvs.12432 ↩