Software 📦

CRAN: GitHub:

New Versions

  • A new version (v0.1.9) of codemetar is on CRAN - Generate codemeta metadata for R packages. See the release notes for changes. Checkout the docs to get started.
  • A new version (v1.3.2) of UCSCXenaTools is on CRAN - download and explore datasets from UCSC Xena data hubs. See the release notes for changes. Checkout the docs to get started.
  • A new version (v0.1.2) of chirps is on CRAN - client for the Climate Hazards Group InfraRed Precipitation with Station Data. See the release notes for changes. Checkout the docs to get started.
  • A new version (v0.5.0) of emld is on CRAN - ecological metadata as linked data. See the release notes for changes. Checkout the docs to get started.
  • A new version (v1.1.0) of rnoaa is on CRAN - NOAA Weather Data from R. See the release notes for changes. Checkout the docs to get started.
  • A new version (v0.6.2) of stplanr is on CRAN - sustainable transport planning. See the release notes for changes. Checkout the docs to get started.
  • A new version (v0.4.2) of worrms is on CRAN - client for World Register of Marine Species. See the release notes for changes. Checkout the docs to get started.
  • A new version (v0.5.0) of iheatmapr is on CRAN - Interactive and complex heatmaps. See the release notes for changes. Checkout the docs to get started.
  • A new version (v0.4.0) of rcoreoa is on CRAN - client for CORE https://core.ac.uk/. See the release notes for changes. Checkout the docs to get started.



Software Review ✔


Software review is now accepting submissions again.

We accept community contributed packages via our software review system - an open software review system, sorta like scholarly paper review, but way better. We’ll highlight newly onboarded packages here. A huge thanks to our reviewers, who do a lot of work reviewing (see the blog post on our review system), and the authors of the packages!

If you want to be a reviewer fill out this short form, and we’ll ping you when there’s a submission that fits in your area of expertise.


The following two packages were recently submitted:



Use Cases

The following 30 works use/cite rOpenSci software:



Call For Maintainers

Part of the mission of rOpenSci is making sustainable software that users can rely on. Some software maintainers need to give up maintenance due to a variety of circumstances. When that happens we try to find new maintainers. Check out our guidance for taking over maintenance of a package.

We’ve had nine recent examples of maintainer transitions within rOpenSci:



Get involved with rOpenSci

We maintain a Contributing Guide that can help direct you to the right place, whether you want to make code contributions, non-code contributions, or other things like sharing use cases.






Keep up with rOpenSci


Footnotes

  1. Adams, R. I., Bhangar, S., Dannemiller, K. C., Eisen, J. A., Fierer, N., Gilbert, J. A., … Bibby, K. (2016). Ten questions concerning the microbiomes of buildings. Building and Environment, 109, 224–234. https://doi.org/10.1016/j.buildenv.2016.09.001 

  2. Dunnett, S., Sorichetta, A., Taylor, G., & Eigenbrod, F. (2020). Harmonised global datasets of wind and solar farm locations and power. Scientific Data, 7(1). https://doi.org/10.1038/s41597-020-0469-8 

  3. Morand, S., Chaisiri, K., Kritiyakan, A., & Kumlert, R. (2020). Disease Ecology of Rickettsial Species: A Data Science Approach. Tropical Medicine and Infectious Disease, 5(2), 64. https://doi.org/10.3390/tropicalmed5020064 

  4. Yang D., Liu L. (2020) Solar Project Financing, Bankability, and Resource Assessment. In: Gandhi O., Srinivasan D. (eds) Sustainable Energy Solutions for Remote Areas in the Tropics. Green Energy and Technology. Springer, Cham https://link.springer.com/chapter/10.1007/978-3-030-41952-3_8 

  5. Hannon, B. A., Fairfield, W. D., Adams, B., Kyle, T., Crow, M., & Thomas, D. M. (2020). Use and abuse of dietary supplements in persons with diabetes. Nutrition & Diabetes, 10(1). https://doi.org/10.1038/s41387-020-0117-6 

  6. Neuts, B., van der Zee, E., Scheider, S., Nyamsuren, E., & Steenberghen, T. Topics and Sentiments in Online Place Reviews, an Innovative Way of Understanding the Perception of a City without Asking. https://conference.corp.at/archive/CORP2020_180.pdf 

  7. Chandler, J. O., Haas, F. B., Khan, S., Bowden, L., Ignatz, M., Enfissi, E. M. A., … Leubner-Metzger, G. (2020). Rocket Science: The Effect of Spaceflight on Germination Physiology, Ageing, and Transcriptome of Eruca sativa Seeds. Life, 10(4), 49. https://doi.org/10.3390/life10040049 

  8. Greenhalgh, S. P., Rosenberg, J. M., Staudt Willet, K. B., Koehler, M. J., & Akcaoglu, M. (2020). Identifying multiple learning spaces within a single teacher-focused Twitter hashtag. Computers & Education, 148, 103809. https://doi.org/10.1016/j.compedu.2020.103809 

  9. Färber, L., van Gemert, R., Langangen, Ø., Durant, J. M., & Andersen, K. H. (2020). Population variability under stressors is dependent on body mass growth and asymptotic body size. Royal Society Open Science, 7(2), 192011. https://doi.org/10.1098/rsos.192011 

  10. Pyle, P., Foster, K. R., Godwin, C. M., Kaschube, D. R., & Saracco, J. F. (2020). Yearling proportion correlates with habitat structure in a boreal forest landbird community. PeerJ, 8, e8898. https://doi.org/10.7717/peerj.8898 

  11. Verhoeven, M. R., Glisson, W. J., & Larkin, D. J. (2020). Niche Models Differentiate Potential Impacts of Two Aquatic Invasive Plant Species on Native Macrophytes. Diversity, 12(4), 162. https://doi.org/10.3390/d12040162 

  12. Eastman, R. T., Roth, J. S., Brimacombe, K. R., Simeonov, A., Shen, M., Patnaik, S., & Hall, M. D. (2020). Remdesivir: A Review of Its Discovery and Development Leading to Emergency Use Authorization for Treatment of COVID-19. ACS Central Science, 6(5), 672–683. https://doi.org/10.1021/acscentsci.0c00489 

  13. Ozturk, R. C., & Altinok, I. (2020). Interaction of Plastics with Marine Species. Turkish Journal of Fisheries and Aquatic Sciences, 20(8). https://doi.org/10.4194/1303-2712-v20_8_07 

  14. DellaPosta, D., & Nee, V. (2020). Emergence of diverse and specialized knowledge in a metropolitan tech cluster. Social Science Research, 86, 102377. https://doi.org/10.1016/j.ssresearch.2019.102377 

  15. Ladwig, L. M., Zirbel, C. R., Sorenson, Q. M., & Damschen, E. I. (2020). A taxonomic, phylogenetic, and functional comparison of restoration seed mixes and historical plant communities in Midwestern oak savannas. Forest Ecology and Management, 466, 118122. https://doi.org/10.1016/j.foreco.2020.118122 

  16. Deza-Araujo, M., Morales-Molino, C., Tinner, W., Henne, P. D., Heitz, C., Pezzatti, G. B., … Conedera, M. (2020). A critical assessment of human-impact indices based on anthropogenic pollen indicators. Quaternary Science Reviews, 236, 106291. https://doi.org/10.1016/j.quascirev.2020.106291 

  17. Yang, D., & Bright, J. M. (2020). Worldwide validation of 8 satellite-derived and reanalysis solar radiation products: A preliminary evaluation and overall metrics for hourly data over 27 years. Solar Energy. https://doi.org/10.1016/j.solener.2020.04.016 

  18. Enkhbayar, A., Haustein, S., Barata, G., & Alperin, J. P. (2020). How much research shared on Facebook happens outside of public pages and groups? A comparison of public and private online activity around PLOS ONE papers. Quantitative Science Studies, 1–22. https://doi.org/10.1162/qss_a_00044 

  19. Van den Berg, S. J. P., Rendal, C., Focks, A., Butler, E., Peeters, E. T. H. M., De Laender, F., & Van den Brink, P. J. (2020). Potential impact of chemical stress on freshwater invertebrates: A sensitivity assessment on continental and national scale based on distribution patterns, biological traits, and relatedness. Science of The Total Environment, 731, 139150. https://doi.org/10.1016/j.scitotenv.2020.139150 

  20. Carroll, H. M., Wanamaker, A. D., Clark, L. G., & Wilsey, B. J. (2020). Ragweed and sagebrush pollen can distinguish between vegetation types at broad spatial scales. Ecosphere, 11(5). https://doi.org/10.1002/ecs2.3120 

  21. Kang, W., Zhang, M., Wang, Q., Gu, D., Huang, Z., Wang, H., … Jin, X. (2020). The SLC Family Are Candidate Diagnostic and Prognostic Biomarkers in Clear Cell Renal Cell Carcinoma. BioMed Research International, 2020, 1–17. https://doi.org/10.1155/2020/1932948 

  22. Feldmann, M. J., Hardigan, M. A., Famula, R. A., López, C. M., Tabb, A., Cole, G. S., & Knapp, S. J. (2020). Multi-dimensional machine learning approaches for fruit shape phenotyping in strawberry. GigaScience, 9(5). https://doi.org/10.1093/gigascience/giaa030 

  23. Marple, T. (2020). The social management of complex uncertainty: Central Bank similarity and crisis liquidity swaps at the Federal Reserve. The Review of International Organizations. https://doi.org/10.1007/s11558-020-09378-x 

  24. Bubac, C. M., Miller, J. M., & Coltman, D. W. (2020). The genetic basis of animal behavioural diversity in natural populations. Molecular Ecology, 29(11), 1957–1971. https://doi.org/10.1111/mec.15461 

  25. Liu, Y., Wang, L., Lo, K.-W., & Lui, V. W. Y. (2020). Omics-wide quantitative B-cell infiltration analyses identify GPR18 for human cancer prognosis with superiority over CD20. Communications Biology, 3(1). https://doi.org/10.1038/s42003-020-0964-7 

  26. Callaghan, T., Karch, A., & Kroeger, M. (2020). Model State Legislation and Intergovernmental Tensions over the Affordable Care Act, Common Core, and the Second Amendment. Publius: The Journal of Federalism. https://doi.org/10.1093/publius/pjaa012 

  27. Rogers, A., O. Aburto-Oropeza, et al. 2020. Critical Habitats and Biodiversity: Inventory, Thresholds and Governance. Washington, DC: World Resources Institute. https://www.oceanpanel.org/blue-papers/critical-habitats-and-biodiversity-inventory-thresholds-and-governance 

  28. Holzmeyer, L., Hartig, A.-K., Franke, K., Brandt, W., Muellner-Riehl, A. N., Wessjohann, L. A., & Schnitzler, J. (2020). Evaluation of plant sources for antiinfective lead compound discovery by correlating phylogenetic, spatial, and bioactivity data. Proceedings of the National Academy of Sciences, 117(22), 12444–12451. https://doi.org/10.1073/pnas.1915277117 

  29. Bramlett, B. H., & Burge, R. P. (2020). God Talk in a Digital Age: How Members of Congress Use Religious Language on Twitter. Politics and Religion, 1–23. https://doi.org/10.1017/s1755048320000231 

  30. Vogler, D., Udris, L., & Eisenegger, M. (2020). Measuring Media Content Concentration at a Large Scale Using Automated Text Comparisons. Journalism Studies, 1–20. https://doi.org/10.1080/1461670x.2020.1761865